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Using mascarade package3 months ago
Package installation | Loading necessary libraries | Example run | Working with Seurat | Session info
mascarade 0.4.3.9000Alexey Sergushichev mascarade-tutorial.Rmd
Gallery of mascarade-generaded masks3 months ago
Loading necessary libraries | PBMC-3K UMAP | PBMC-3K t-SNE | Aya | Chia-Jung | Vladimir Shitov | Session info
mascarade 0.4.3.9000Alexey Sergushichev mascarade-gallery.Rmd
Gene set co-regulation analysis tutorial4 months ago
Overiew of GESECA method | Analysis of time course data | Analysis of single-cell RNA-seq | Analysis of spatial transcriptomic data | Analysis of 10X visium spatial data | Analysis of 10X xenium spatial transcriptomics data | Session info
fgsea 1.39.2Alexey Sergushichev geseca-tutorial.Rmd
phantasusLite tutorial4 months ago
Introduction | Installation | Loading precomputed RNA-seq counts | Inferring sample groups | Working with GCT files | Session info
phantasusLite 1.11.4Alexey Sergushichev phantasusLite-tutorial.Rmd
Using fgsea package12 months ago
Loading necessary libraries | Quick run | Performance considerations | Using Reactome pathways | Starting from files | Over-representation test | Session info
fgsea 1.39.2Alexey Sergushichev fgsea-tutorial.Rmd