Package: mascarade 0.4.3.9000

Alexey Sergushichev

mascarade: Generating Cluster Masks for Single-Cell Dimensional Reduction Plots

Implements a procedure to automatically generate 2D masks for clusters on dimensional reduction plots from methods like t-SNE (t-distributed stochastic neighbor embedding) or UMAP (uniform manifold approximation and projection), with a focus on single-cell RNA-sequencing data.

Authors:Alexey Sergushichev [aut, cre]

mascarade_0.4.3.9000.tar.gz
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mascarade_0.4.3.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mascarade/json (API)

# Install 'mascarade' in R:
install.packages('mascarade', repos = c('https://alserglab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alserglab/mascarade/issues

Pkgdown/docs site:https://alserglab.wustl.edu

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

7.74 score 46 stars 1 packages 20 scripts 442 downloads 4 exports 44 dependencies

Last updated from:6e1c71e159. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK246
linux-devel-x86_64OK264
source / vignettesOK412
linux-release-arm64OK217
linux-release-x86_64OK259
macos-release-arm64OK210
macos-release-x86_64OK411
macos-oldrel-arm64OK213
macos-oldrel-x86_64OK396
windows-devel-arm64OK439
windows-devel-x86_64OK276
windows-release-arm64OK456
windows-release-x86_64OK256
windows-oldrel-x86_64OK240
wasm-releaseOK195

Exports:fancyMaskgenerateMaskgenerateMaskSeuratgeom_mark_shape

Dependencies:abindbase64encBHclicpp11data.tabledeldirfarverggforceggplot2gluegoftestgtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixnlmepolyclippolylabelrR6RColorBrewerRcpprlangS7scalesspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssystemfontstensortidyselecttweenrvctrsviridisLitewithr

Using mascarade package
Package installation | Loading necessary libraries | Example run | Working with Seurat | Session info
Rendered frommascarade-tutorial.Rmdusingknitr::rmarkdown

Last update: 2026-07-28
Started: 2024-12-23

Gallery of mascarade-generaded masks
Loading necessary libraries | PBMC-3K UMAP | PBMC-3K t-SNE | Aya | Chia-Jung | Vladimir Shitov | Session info
Rendered frommascarade-gallery.Rmdusingknitr::rmarkdown

Last update: 2026-07-24
Started: 2025-04-20